Classical swine fever virus isolate BRESCIAX complete genome.docx
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Classical swine fever virus isolate BRESCIAX complete genome.docx
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ClassicalswinefevervirusisolateBRESCIAXcompletegenome
ClassicalswinefevervirusisolateBRESCIAX,completegenome
GenBank:
AY578687.1
FASTAGraphics
∙Features
∙Sequence
LOCUSAY57868712285bpRNAlinearVRL31-MAR-2005
DEFINITIONClassicalswinefevervirusisolateBRESCIAX,completegenome.
ACCESSIONAY578687
VERSIONAY578687.1GI:
50882740
KEYWORDS.
SOURCEClassicalswinefevervirus
ORGANISMClassicalswinefevervirus
Viruses;ssRNApositive-strandviruses,noDNAstage;Flaviviridae;
Pestivirus.
REFERENCE1(bases1to12285)
AUTHORSRisatti,G.R.,Borca,M.V.,Kutish,G.F.,Lu,Z.,Holinka,L.G.,
French,R.A.,Tulman,E.R.andRock,D.L.
TITLETheE2glycoproteinofclassicalswinefevervirusisavirulence
determinantinswine
JOURNALJ.Virol.79(6),3787-3796(2005)
PUBMED15731272
REFERENCE2(bases1to12285)
AUTHORSBorca,M.V.,Risatti,G.,Lu,Z.,Kutish,G.F.andRock,D.L.
TITLEDirectSubmission
JOURNALSubmitted(22-MAR-2004)AfricanSwineFeverResearch,PlumIsland
AnimalDiseaseCenter,U.S.Dept.Agriculture,Agricultural
ResearchService,P.O.Box848,Greenport,NY11944-0848,USA
FEATURESLocation/Qualifiers
source1..12285
/organism="Classicalswinefevervirus"
/mol_type="genomicRNA"
/isolate="BRESCIAX"
/isolation_source="BresciaPlumIsland"
/db_xref="taxon:
11096"
/note="virulent;isolatedin2001"
CDS362..12058
/codon_start=1
/product="polyprotein"
/protein_id="AAT85717.1"
/db_xref="GI:
50882741"
/translation="MELNHFELLYKTNKQKPMGVEEPVYDVTGRPLFGDPSEVHPQST
LKLPHDRGRGNIKTTLKNLPRRGDCRSGNHLGPVSGIYVKPGPVFYQDYMGPVYHRAP
LEFFDEAQFCEVTKRIGRVTGSDGKLYHIYVCIDGCILLKLAKRGEPRTLKWIRNLTD
CPLWVTSCSDDGASASKEKKPDRINKGKLKIAPKEHEKDSRTKPPDATIVVEGVKYQV
KKKGKVKGKNTQDGLYHNKNKPPESRKKLEKALLAWAVIAIMLYQPVAAENITQWNLS
DNGTNGIQHAMYLRGVSRSLHGIWPEKICKGVPTYLATDTELREIQGMMDASEGTNYT
CCKLQRHEWNKHGWCNWYNIDPWIQLMNRTQANLAEGPPSKECAVTCRYDKNADINVV
TQARNRPTTLTGCKKGKNFSFAGTVIEGPCNFNVSVEDILYGDHECGSLLQDTALYLV
DGMTNTIERARQGAARVTSWLGRQLRTAGKRLEGRSKTWFGAYALSPYCNVTSKIGYI
WYTNNCTPACLPKNTKIIGPGKFDTNAEDGKILHEMGGHLSEFLLLSLVVLSDFAPET
ASALYLILHYVIPQSHEEPEGCDTNQLNLTVELRTEDVIPSSVWNVGKYVCVRPDWWP
YETKVALLFEEAGQVVKLALRALRDLTRVWNSASTTAFLICLIKVLRGQVVQGVIWLL
LVTGAQGRLACKEDHRYAISTTNEIGLLGAEGLTTTWKEYNHNLQLDDGTVKAICMAG
SFKVTALNVVSRRYLASLHKDALPTSVTFELLFDGTSPLTEEMGDDFGFGLCPYDTSP
VVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRREKPFPYRRDC
VTTTVENEDLFYCKWGGNWTCVKGEPVTYTGGPVKQCRWCGFDFNEPDGLPHYPIGKC
ILANETGYRIVDSTDCNRDGVVISTEGSHECLIGNTTVKVHALDERLGPMPCRPKEIV
SSAGPVRKTSCTFNYAKTLRNRYYEPRDSYFQQYMLKGEYQYWFDLDVTDRHSDYFAE
FIVLVVVALLGGRYVLWLIVTYIVLTEQLAAGLQLGQGEVVLIGNLITHTDIEVVVYF
LLLYLVMRDEPIKKWILLLFHAMTNNPVKTITVALLMVSGVAKGGKIDGGWQRLPETN
FDIQLALTVIVVAVMLLAKKDPTTVPLVITVATLRTAKITNGLSTDLAIATVSTALLT
WTYISDYYKYKTLLQYLISTVTGIFLIRVLKGVGELDLHTPTLPSYRPLFFILVYLIS
TAVVTRWNLDIAGLLLQCVPTLLMVFTMWADILTLILILPTYELTKLYYLKEVKIGAE
RGWLWKTNFKRVNDIYEVDQAGEGVYLFPSKQKTGTITGTMLPLIKAILISCISNKWQ
FIYLLYLIFEVSYYLHKKIIDEIAGGTNFISRLVAALIEANWAFDNEEVRGLKKFFLL
SSRVKELIIKHKVRNEVMVHWFGDEEVYGMPKLVGLVKAATLSKNKHCILCTVCENRE
WRGETCPKCGRFGPPVTCGMTLADFEEKHYKRIFFREDQSEGPVREEYAGYLQYRARG
QLFLRNLPVLATKVKMLLVGNLGTEVGDLEHLGWVLRGPAVCKKVTEHEKCTTSIMDK
LTAFFGVMPRGTTPRAPVRFPTSLLKIRRGLETGWAYTHQGGISSVDHVTCGKDLLVC
DTMGRTRVVCQSNNKMTDESEYGVKTDSGCPEGARCYVFNPEAVNISGTKGAMVHLQK
TGGEFTCVTASGTPAFFDLKNLKGWSGLPIFEASSGRVVGRVKVGKNEDSKPTKLMSG
IQTVSKSTTDLTEMVKKITTMNRGEFRQITLATGAGKTTELPRSVIEEIGRHKRVLVL
IPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMPQPKLRAA
MVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTATPAGTVTTTGQKHPIEEY
IAPEVMKGEDLGSEYLDIAGLKIPVEEMKSNMLVFVPTRNMAVETAKKLKAKGYNSGY
YYSGEDPSNLRVVTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPF
IVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDG
INITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMARTDHPEPIQL
AYNSYETQVPVLFPKIKNGEVTDSYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLG
LDWPDPGNQGTVEAGRALKQVVGLSTAENALLVALFGYVGYQALSKRHIPVVTDIYSI
EDHRLEDTTHLQYAPNAIKTEGKETELKELAQGDVQRCMEAMTNYARDGIQFMKSQAL
KVKETPTYKETMDTVADYVKKFMEALADSKEDIIKYGLWGTHTTLYKSIGARLGNETA
FATLVVKWLAFGGESIADHVKQAATDLVVYYIINRPQFPGDTETQQEGRKFVASLLVS
ALATYTYKSWNYNNLSKIVEPALATLPYAATALKLFAPTRLESVVILSTAIYKTYLSI
RRGKSDGLLGTGVSAAMEIMSQNPVSVGIAVMLGVGAVAAHNAIEASEQKRTLLMKVF
VKNFLDQAATDELVKESPEKIIMALFEAVQTVGNPLRLVYHLYGVFYKGWEAKELAQR
TAGRNLFTLIMFEAVELLGVDSEGKIRQLSSNYILELLYKFRDSIKSSVRQMAISWAP
APFSCDWTPTDDRIGLPQDNFLRVETKCPCGYKMKAVKNCAGELRLLEEEGSFLCRNK
FGRGSRNYRVTKYYDDNLSEIKPVIRMEGHVELYYKGATIKLDFNNSKTILATDKWEV
DHSTLVRVLKRHTGAGYRGAYLGEKPNHKHLIERDCATITKDKVCFLKMKRGCAFTYD
LSLHNLTRLIELVHKNNLEDKEIPAVTVTTWLAYTFVNEDIGTIKPAFGEKITPEMQE
EITLQPAVVVDATDVTVTVVGETPTMTTGETPTTFTSSGPDPKGQQVLKLGVGEGQYP
GTNPQRASLHEAIQSADERPSVLILGSDKATSNRVKTVKNVKVYRGRDPLEVRDMMRR
GKILVIALSRVDNALLKFVDYKGTFLTRETLEALSLGRPKKKNITKAEAQWLLRLEDQ
MEELPDWFAAGEPIFLEANIKHDRYHLVGDIATIKEKAKQLGATDSTKISKEVGAKVY
SMKLSNWVMQEENKQSNLTPLFEELLQQCPPGGQNKTAHMVSAYQLAQGNWMPTSCHV
FMGTISARRTKTHPYEAYVKLRELVEEHKMKTLCPGSSLRKHNEWVIGKIKYQGNLRT
KHMLNPGKVAEQLHREGHRHNVYNKTIGSVMTATGIRLEKLPVVRAQTDTTNFHQAIR
DKIDKEENLQTPGLHKKLMEVFNALKRPELESSYDAVEWEELERGINRKGAAGFFERK
NIGEILDSEKNKVEEIIDNLKKGRNIKYYETAIPKNEKRDVNDDWTAGDFVDEKKPRV
IQYPEAKTRLAITKVMYKWVKQKPVVIPGYEGKTPLFQIFDKVKKEWDQFQNPVAVSF
DTKAWDTQVTTNDLELIKDIQKYYFKKKWHKFIDTLTMHMSEVPVITADGEVYIRKGQ
RGSGQPDTSAGNSMLNVLTMVYAFCEATGVPYKSFDRVAKIHVCGDDGFLITERALGE
KFASKGVQILYEAGKPQKITEGDKMKVAYQFDDIEFCSHTPIQVRWSDNTSSYMPGRN
TTTILAKMATRLDSSGERGTIAYEKAVAFSFLLMYSWNPLIRRICLLVLSTELQVKPG
KSTTYYYEGDPISAYKEVIGHNLFDLKRTSFEKLAKLNLSMSVLGAWTRHTSKRLLQD
CVNMGVKEGNWLVNADRLVSSKTGNRYVPGEGHTLQGRHYEELVLARKQINSFQGTDR
YNLGPIVNMVLRRLRVMMMTLIGRGV"
ORIGIN
1agttcattctcgtgtacatgattggacaaatcaaaatctcaatttggttcagggcctccc
61tccagcgacggccgagctgggctagccatgcccacagtaggactagcaaacggagggact
121agccgtagtggcgagctccctgggtggtctaagtcctgagtacaggacagtcgtcagtag
181ttcgacgtgagcagaagcccacctcgagatgctatgtggacgagggcatgcccaagacac
241accttaaccctagcgggggtcgttagggtgaaatcacaccatgtgatgggagtacgacct
301gatagggtgctgcagaggcccactattaggctagtataaaaatctctgctgtacatggca
361catggagttgaatcattttgaacttttatacaaaacaaacaaacaaaaaccaatgggagt
421ggaggaaccggtatacgatgtaacggggagaccattgtttggagacccaagtgaggtaca
481cccacaatcaacattgaagctaccacatgatagggggagaggcaacatcaaaacaacact
541gaagaacctacctaggagaggtgactgcaggagtggcaaccacctaggcccggttagtgg
601gatatatgtaaagcccggccctgtcttttatcaggactacatgggcccagtctatcatag
661agcccctctagagttttttgacgaagcacagttttgtgaggtgaccaaaaggataggtag
721ggtgacaggtagtgacggaaagctttaccatatatacgtgtgcatcgatggttgcatcct
781gctgaagctagccaagaggggcgagccaagaaccctgaagtggattagaaatctcaccga
841ctgtccattgtgggttaccagttgttctgatgatggtgcaagtgcaagtaaagagaagaa
901accagataggatcaacaagggtaaattaaagatagccccaaaagagcatgagaaggacag
961caggactaagccacctgatgctacgattgtagtggaaggagtaaaataccaggtcaaaaa
1021gaaaggtaaagttaagggaaagaatacccaagacggcctgtaccacaacaagaataaacc
1081accagaatctaggaagaaattagaaaaagccctattggcatgggcagtgatagcaattat
1141gttataccaacctgttgcagccgaaaatataactcaatggaacctgagtgacaacggtac
1201caatggtatccagcacgctatgtaccttagaggagtcagcagaagcttgcatgggatctg
1261gccagaaaaaatatgcaaaggagtccccacctacctggccacagacacggaactgagaga
1321aatacagggaatgatggatgccagcgaggggacaaactatacgtgctgtaagttacagag
1381acatgaatggaacaaacatggatggtgtaactggtataacatagacccctggatacagtt
1441gatgaatagaacccaagcaaacttggcagaaggccctccgagcaaggagtgcgccgtgac
1501ttgcaggtacgataaaaatgctgacattaacgtggtcacccaggccagaaacaggccaac
1561caccctaactggctgcaagaaagggaaaaatttttcttttgcgggtacagttatagaggg
1621cccatgtaatttcaacgtttctgttgaggatatcttatatggggatcatgagtgtggcag
1681tctactccaggatacggctctatacctagtagatggaatgaccaacactatagagagagc
1741caggcagggagccgcgagggtgacatcttggctagggaggcaactcagaactgccgggaa
1801gaggttggagggcagaagcaaaacctggtttggtgcctatgccctatcaccttattgtaa
1861tgtgacaagcaaaatagggtacatatggtacactaacaactgtaccccggcttgcctccc
1921caaaaatacaaagataataggccccggtaaatttgacactaacgcggaagacggaaagat
1981tctccatgagatggggggccacctatcagaatttctgctgctctctctggtcgttctgtc
2041tgacttcgcccctgaaacagccagcgcgttatacctcattttgcactacgtgatccctca
2101atcccatgaagaacctgaaggctgtgacacaaaccagctgaatttaacagtggaactcag
2161gactgaagacgtgataccatcatcagtctggaatgttggcaaatatgtgtgtgttagacc
2221agactggtggccatatgaaaccaaggtggctttgttatttgaagaggcaggacaggtcgt
2281aaagttagccttgcgggcactgagggatttaaccagggtctggaatagcgcatcaaccac
2341ggcattcctcatctgcttgataaaagtattaagaggacaggtcgtgcaaggtgtgatatg
2401gctgttactggtaactggggcacaaggccggctagcctgcaaggaagatcacaggtacgc
2461tatatcaacaaccaatgagatagggctacttggggccgaaggtctcactaccacctggaa
2521agaatacaaccacaatttgcaactggatgatgggaccgtcaaggccatctgcatggcagg
2581ttcctttaaagtcacagcacttaatgtggttagtaggaggtatctggcatcattacataa
2641ggacgctttacccacttccgtgacattcgagctcctgttcgacgggaccagcccattgac
2701cgaggaaatgggagatgacttcgggttcggactgtgtccgtatgatacgagccctgtagt
2761caagggaaagtacaacacaaccttgttgaatggtagtgcattctacctagtttgcccaat
2821agggtggacgggtgttatagagtgcacggcagtgagcccgacaactctgagaacagaagt
2881ggtaaagaccttcagaagagagaaaccctttccgtacagaagggattgtgtgaccactac
2941agtggaaaatgaagatctattctactgtaaatgggggggcaattggacatgtgtgaaagg
3001tgaaccagtgacctacacgggggggccagtaaaacaatgcagatggtgtggcttcgactt
3061caatgagcctgacggactcccacactaccccataggtaagtgcattttggcaaatgagac
3121aggttacagaatagtggattcaacggactgtaacagagatggcgttgtaatcagcacaga
3181ggggagtcatgagtgcttgattggtaacacaactgtcaaggtgcatgcattagatgaaag
3241actaggccctatgccatgcaggcctaaggagatcgtctctagtgcgggacctgtaaggaa
3301aacttcctgtacattcaactacgcaaaaactctgaggaacaggtattatgagcccaggga
3361cagctatttccaacaatatatgctcaagggcgagtatcagtactggtttgatctggatgt
3421gaccgaccgccactcagattacttcgcagaattcattgtcttggtggtggtggcactgtt
3481gggaggaagatatgtcctgtggctaatagtgacctacatagttctaacagaacaactcgc
3541cgctggtctacagttaggccagggtgaggtagtgttaatagggaacttaa
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